Nearly every tissue in the body undergoes routine turnover of cells as part of normal healthy living. The majority of these cells undergoing turnover die via apoptosis, and then are rapidly removed by phagocytes by
the process of efferocytosis that is anti-inflammatory. However, a number of pathologies have recently
been linked to defective clearance of apoptotic cells. Perturbed clearance arises for many reasons, including
overwhelming of the clearance machinery, disruptions at different stages of efferocytosis, and responses of
phagocytes during efferocytosis, all of which can alter the homeostatic tissue environment. This review
covers linkages of molecules involved in the different phases of efferocytosis to disease pathologies that
can arise due to their loss or altered function.

Figure 1. A Game of Numbers—Erythrocyte
Clearance in Mice and the Phases of
Efferocytosis
(A) Every symbol represents 2.5 3 106 cells of the
respective population. Red blood cells (RBC) are
depicted in red, Kupffer cells (KC) are depicted
in yellow, and red pulp macrophages (RPM) are
depicted in blue. Every day, 600 3 106 RBC are
cleared, resulting in a clearance rate of 7,000
RBC per second. This task is performed by either
10 3 106 KC, 2.5 3 106 macrophages, or both,
resulting in the necessity of each phagocyte to
engulf one RBC on average every 24 min, 6min, or
30 min, respectively.
(B) Efferocytosis is carried out via four distinct
steps, and potential disturbance in one or more of
these steps could result in defective apoptotic cell
clearance and the associated pathologies. The
first step in engulfment of apoptotic cells is the
‘‘Smell phase’’ that involves communication of
dying cells with nearby phagocytes through findme signals that are released in the early stages of
apoptosis. The second step is the ‘‘Taste phase’’
that involves recognition of the ligands of
apoptotic cells, termed ‘‘eat-me signals’’ by the
phagocytes through specific efferocytotic receptors. The third step of the process is the
‘‘Ingestion phase,’’ where signaling in the phagocyte downstream of engagement of apoptotic
cells by phagocytic receptors leads to corpse
internalization. The fourth step is the ‘‘Digestion
and response phase’’ that involves processing of
the corpses and the production of anti-inflammatory mediators by the efferocytic phagocytes.

Figure 2. Molecules Involved in
Efferocytosis and Their Disease Linkage in
Different Tissues
In many tissues of the body, clearance of
apoptotic cells is performed by the professional
phagocytes and non-professional phagocytes.
Pathologies associated with either natural or
induced deletions or mutations of the specific
molecules and their linkage t0 diseases or the
different tissues are shown.


Apoptotic Cell Clearance in
Atherosclerosis and Gut Inflammation
(A) Monocyte-derived macrophages in atherosclerotic plaques take up LDL via CD36, and the
free cholesterol is often released via ABCA1 to
HDL (part of reverse cholesterol transport to
the liver). The macrophages express phosphatidylserine receptors such as MERTK and BAI1,
limiting the accumulation of dead cells and preventing necrotic core formation. Further, BAI1-
mediated efferocytosis increases the capacity of
macrophages to perform reverse cholesterol
efflux via upregulation of ABCA1. If the load of
LDL is too high, efferocytosis is impaired, or the
reverse cholesterol efflux is reduced, then macrophages accumulate cholesterol and develop
into foam cells. Foam cells show inflammatory
characteristics, impaired efferocytosis, and are
poised to undergo cell death. Dying foam cells
and inflammation-induced cell death of plaqueassociated cells contribute to necrotic core
formation.
(B) During homeostasis, apoptotic cells in the
epithelial lining are taken up by nearby healthy
epithelial cells, by professional phagocytes of the
lamina propria (such as dendritic cells), or shed into
the lumen. Under these circumstances, the epithelial barrier function is maintained, and cell clearance
establishes a tolerogenic, anti-inflammatory environment. If apoptotic cell clearance is impaired or
cell death exceeds the clearance capacity of the
intestine, apoptotic cells progress into secondary
necrosis. Secondary necrotic cells either release
pro-inflammatory mediators themselves or induce
an inflammatory signature in the phagocytes. The
disruptions of epithelial lining allow bacterial passage through the barrier, further contributing to the
overall inflammatory environment associated with
increased cell death and clearance deficiency